MolNFT v1 · #178972 · protein
Co-co-bound nitrogenase mofe-protein from a. vinelandii
7JRF: “Co-co-bound nitrogenase mofe-protein from a. vinelandii”. X-ray diffraction, 7 ligands (HCA, ICE, CLF). MolNFT v1 #178972 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7JRF
- Type
- protein
- Length
- 1,998 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P07328, P07329
- Ligands
- HCA, ICE, CLF, CA, MG, CMO, H2S
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 477 | — | P07328 |
| B, D | — | protein | 522 | — | P07329 |
Ligands and binding sites
- HCA · 3-hydroxy-3-carboxy-adipic acid · ligand · 2 copies · chains A, C
- ICE · iron-sulfur-molybdenum cluster with interstitial carbon · ligand · 2 copies · chains A, C
- CLF · FE(8)-S(7) cluster · ligand · 2 copies · chains A, B, C, D
- CA · Calcium ion · metal · 2 copies · chains B, D
- MG · Magnesium ion · metal · 2 copies · chains B, D
- CMO · Carbon monoxide · ion · 4 copies · chains A, C
- H2S · Hydrosulfuric acid · ion · 2 copies · chains A, B, C, D
- IMD · Imidazole · additive · 8 copies · chains A, B, D, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7JRF · Co-co-bound nitrogenase mofe-protein from a. vinelandii · the same entry in another collection · chain A against A, TM-score 1.00
- P07328 · AlphaFold monomer V2.0 prediction for nitrogenase molybdenum-iron protein alpha chain… · a predicted model of the same protein · chain A against A, TM-score 1.00
- P07329 · AlphaFold monomer V2.0 prediction for nitrogenase molybdenum-iron protein beta chain… · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07328
- Every structure of UniProt P07329
- Elsewhere: RCSB PDB 7JRF · PDBe 7JRF · UniProt P07328 · UniProt P07329
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.