MolNFT v1 · #178844 · protein

The structure of CBM32-1 and CBM32-2 domains from clostridium perfringens zmpb in complex with galnac

7JNF · F5/8 type C domain protein: “The structure of CBM32-1 and CBM32-2 domains from clostridium perfringens zmpb in complex with galnac”. X-ray diffraction, 2 ligands (A2G, CA), 1 pocket (best druggability 0.38). MolNFT v1 #178844 on…

PDB: 7JNF
Type: protein
Length: 398 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: F5/8 type C domain protein
UniProt: A0A0H2YN38
Ligands: A2G, CA
Pockets: 1 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 19% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	F5/8 type C domain protein	protein	398	19% helix, 39% strand	A0A0H2YN38

Ligands and binding sites

A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · chains A
CA · Calcium ion · metal · 2 copies · chains A
GOL · Glycerol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	90	0.38	0.76	23	empty

Compared structures

7JNF · The structure of CBM32-1 and CBM32-2 domains from Clostridium perfringens ZmpB in complex… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H2YN38
Elsewhere: RCSB PDB 7JNF · PDBe 7JNF · UniProt A0A0H2YN38

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