MolNFT v1 · #178738 · protein + DNA
Structure of drosophila orc bound to DNA
7JK5: “Structure of drosophila orc bound to DNA”. Electron microscopy, 2 ligands (ATP, MG). MolNFT v1 #178738 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7JK5
- Type
- protein + DNA
- Length
- 2,067 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q24168, Q7K2L1, Q9W102, Q24169, Q9Y1B2, O16810
- Ligands
- ATP, MG
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 175 | — | Q24168 |
| C | — | protein | 590 | — | Q7K2L1 |
| D | — | protein | 441 | — | Q9W102 |
| E | — | protein | 393 | — | Q24169 |
| F | — | protein | 14 | — | Q9Y1B2 |
| A | — | protein | 390 | — | O16810 |
| H | — | dna | 32 | — | — |
| I | — | dna | 32 | — | — |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 3 copies · chains D, E, C, A
- MG · Magnesium ion · metal · 3 copies · chains D, E, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7JK5 · Structure of Drosophila ORC bound to DNA · the same entry in another collection · chain I against I, TM-score 1.00
- O16810 · AlphaFold monomer V2.0 prediction for origin recognition complex subunit 1 (O16810) · a predicted model of the same protein · chain A against A, TM-score 0.98
- Q24168 · AlphaFold monomer V2.0 prediction for origin recognition complex subunit 2 (Q24168) · a predicted model of the same protein · chain B against A, TM-score 0.98
- Q24169 · AlphaFold monomer V2.0 prediction for origin recognition complex subunit 5 (Q24169) · a predicted model of the same protein · chain E against A, TM-score 0.96
- Q9Y1B2 · AlphaFold monomer V2.0 prediction for origin recognition complex subunit 6 (Q9Y1B2) · a predicted model of the same protein · chain F against A, TM-score 0.55
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q24168
- Every structure of UniProt Q7K2L1
- Every structure of UniProt Q9W102
- Every structure of UniProt Q24169
- Every structure of UniProt Q9Y1B2
- Every structure of UniProt O16810
- Elsewhere: RCSB PDB 7JK5 · PDBe 7JK5 · UniProt Q24168 · UniProt Q7K2L1 · UniProt Q9W102 · UniProt Q24169 · UniProt Q9Y1B2 · UniProt O16810
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