MolNFT v1 · #178607 · protein
Cryo-EM structure of bedaquiline-saturated mycobacterium smegmatis ATP synthase rotational state 3
7JGA: “Cryo-EM structure of bedaquiline-saturated mycobacterium smegmatis ATP synthase rotational state 3”. Electron microscopy, 5 ligands (BQ1, ATP, ADP). MolNFT v1 #178607 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7JGA
- Type
- protein
- Length
- 4,830 residues
- Chains
- 20
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0D6IV93, A0A0D6IU77, A0A0D6IUE3, A0A0D6IU73, A0R206, A0A0D6IV98, A0R203, Q5TIX5
- Ligands
- BQ1, ATP, ADP, MG, PO4
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 514 | — | A0A0D6IV93 |
| B | — | protein | 508 | — | A0A0D6IV93 |
| C | — | protein | 515 | — | A0A0D6IV93 |
| D, E, F | — | protein | 464 | — | A0A0D6IU77 |
| G | — | protein | 279 | — | A0A0D6IUE3 |
| H | — | protein | 117 | — | A0A0D6IU73 |
| a | — | protein | 207 | — | A0R206 |
| b | — | protein | 141 | — | A0A0D6IV98 |
| d | — | protein | 428 | — | A0R203 |
| 1, 2, 3, 4, 5, 6, 7, 8, 9 | — | protein | 81 | — | Q5TIX5 |
Ligands and binding sites
- BQ1 · Bedaquiline · ligand · 7 copies · chains a, 1, 2, 4, 5, 6, 7, 8, 9
- ATP · Adenosine-5'-triphosphate · ligand · 3 copies · chains A, F, B, D, C, E
- ADP · Adenosine-5'-diphosphate · ligand · chains B, E
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, E
- PO4 · Phosphate ion · ion · chains C, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- A0R203 · AlphaFold monomer V2.0 prediction for ATP synthase subunit B-delta (A0R203) · a predicted model of the same protein · chain d against A, TM-score 0.73
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D6IV93
- Every structure of UniProt A0A0D6IU77
- Every structure of UniProt A0A0D6IUE3
- Every structure of UniProt A0A0D6IU73
- Every structure of UniProt A0R206
- Every structure of UniProt A0A0D6IV98
- Every structure of UniProt A0R203
- Every structure of UniProt Q5TIX5
- Elsewhere: RCSB PDB 7JGA · PDBe 7JGA · UniProt A0A0D6IV93 · UniProt A0A0D6IU77 · UniProt A0A0D6IUE3 · UniProt A0A0D6IU73 · UniProt A0R206 · UniProt A0A0D6IV98 · UniProt A0R203 · UniProt Q5TIX5
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