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Ligand · BQ1

BQ1 · Bedaquiline

BQ1, Bedaquiline (C32 H31 Br N2 O2, 555.5 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
BQ1
Formula
C32 H31 Br N2 O2
Class
ligand
Structures
8
PDB entries
6

Binding sites

BQ1 in 8 structures; the first of them:

  • 7JGA · Cryo-EM structure of bedaquiline-saturated Mycobacterium smegmatis ATP synthase… · BQ1 1601 · binds PHE169, PRO172, ILE173, VAL176, ALA28, ASP32, GLY62, GLU65 and 8 more
  • 7NJV · Mycobacterium smegmatis ATP synthase Fo combined class 2 · BQ1 N101 · binds ALA66, ALA67, ILE70, GLY62, GLU65, ALA66, TYR68, PHE69 and 4 more
  • 8KI3 · Structure of the human ATP synthase bound to bedaquiline (composite) · BQ1 4101 · binds VAL18, ALA55, GLU58, GLY61, LEU62, LEU65, MET60, PHE63 and 3 more
  • 7JG8 · Cryo-EM structure of bedaquiline-saturated mycobacterium smegmatis ATP synthase… · BQ1 1601 · binds LEU63, ALA67, GLY62, GLU65, ALA66
  • 7JG9 · Cryo-EM structure of bedaquiline-saturated mycobacterium smegmatis ATP synthase… · BQ1 1601 · binds ALA66, ALA66, ALA67
  • 7JGA · Cryo-EM structure of bedaquiline-saturated mycobacterium smegmatis ATP synthase… · BQ1 1601 · binds PRO172, ILE173, VAL176, ALA28, GLY62, GLU65, ALA66, TYR68 and 5 more
  • 7JGC · Cryo-EM structure of bedaquiline-saturated mycobacterium smegmatis ATP synthase fo region · BQ1 1601 · binds PRO172, ILE173, VAL176, ALA28, GLY62, GLU65, ALA66, TYR68 and 5 more
  • 7NJV · Mycobacterium smegmatis ATP synthase fo combined class 2 · BQ1 N101 · binds ALA66, ALA67, ILE70, GLY62, GLU65, ALA66, TYR68, PHE69 and 4 more

Residues it binds most

ALA 38, GLY 34, PHE 22, GLU 28, ILE 24, LEU 22, TYR 23, VAL 9, PRO 5, ASP 1 (residue and the binding sites it lines).

Found with

  • ADP · Adenosine-5'-diphosphate
  • ATP · Adenosine-5'-triphosphate
  • MG · Magnesium ion
  • PO4 · Phosphate ion

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