MolNFT v1 · #178427 · protein
The crystal structure of a domain-swapped dimeric maltodextrin-binding protein male from salmonella enterica
7FFW: “The crystal structure of a domain-swapped dimeric maltodextrin-binding protein male from salmonella enterica”. X-ray diffraction, 2 ligands (2ME, GLC), 4 pockets (best druggability 0.63). MolNFT v1 #178427 on GenesisL1: 3D…
- PDB
- 7FFW
- Type
- protein
- Length
- 368 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maltodextrin-binding protein
- UniProt
- A0A0W3SG76
- Ligands
- 2ME, GLC
- Pockets
- 4 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maltodextrin-binding protein | protein | 368 | 45% helix, 5% strand | A0A0W3SG76 |
Ligands and binding sites
- 2ME · Methoxyethane · ligand · chains A
- GLC · alpha-D-glucopyranose · sugar · 5 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 423 | 0.63 | 0.77 | 46 | empty |
| 2 | 565 | 0.62 | 0.74 | 51 | empty |
| 3 | 364 | 0.61 | 0.77 | 42 | empty |
| 4 | 167 | 0.48 | 0.76 | 25 | empty |
Compared structures
- 7FFW · The crystal structure of a domain-swapped dimeric maltodextrin-binding protein MalE from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0W3SG76
- Elsewhere: RCSB PDB 7FFW · PDBe 7FFW · UniProt A0A0W3SG76
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