MolNFT v1 · #177998 · protein

Odinarchaeota tubulin H393D mutant, in a pseudo protofilament arrangement, after GTP hydrolysis and phosphate release

7F1B · Tubulin-like protein: “Odinarchaeota tubulin H393D mutant, in a pseudo protofilament arrangement, after GTP hydrolysis and phosphate…”. X-ray diffraction, 2 ligands (GDP, MG), 5 pockets (best druggability 0.58). MolNFT v1 #177998 on…

PDB: 7F1B
Type: protein
Length: 413 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tubulin-like protein
UniProt: A0A1Q9N9N5
Ligands: GDP, MG
Pockets: 5 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tubulin-like protein	protein	413	45% helix, 20% strand	A0A1Q9N9N5

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	252	0.58	0.79	35	GDP, MG
2	110	0.43	0.77	25	empty
3	88	0.36	0.76	17	empty
4	72	0.32	0.75	16	empty
5	50	0.31	0.77	15	empty

Compared structures

7F1B · Odinarchaeota tubulin H393D mutant, in a pseudo protofilament arrangement, after GTP… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1Q9N9N5
Elsewhere: RCSB PDB 7F1B · PDBe 7F1B · UniProt A0A1Q9N9N5

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