MolNFT v1 · #177756 · protein
Crystal structure of the complex formed by wolbachia cytoplasmic incompatibility factors cida and CIDBND1-ND2 from wpip
7ESY · Bacteria factor 1: “Crystal structure of the complex formed by wolbachia cytoplasmic incompatibility factors cida and CIDBND1-ND2…”. X-ray diffraction, 1 ligand (CA), 16 pockets (best druggability 0.83). MolNFT v1 #177756 on…
- PDB
- 7ESY
- Type
- protein
- Length
- 1,138 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bacteria factor 1; ULP_PROTEASE domain-containing protein
- UniProt
- B3CP62, B3CP63
- Ligands
- CA
- Pockets
- 16 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bacteria factor 1 | protein | 406 | 66% helix, 3% strand | B3CP62 |
| B | ULP_PROTEASE domain-containing protein | protein | 732 | 36% helix, 27% strand | B3CP63 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
16 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 353 | 0.83 | 0.92 | 51 | empty |
| 2 | 397 | 0.82 | 0.91 | 67 | empty |
| 3 | 141 | 0.68 | 0.89 | 29 | empty |
| 4 | 113 | 0.66 | 0.90 | 22 | empty |
| 5 | 69 | 0.63 | 0.92 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 2615 Ų buried · 51 hydrogen bonds · protein-protein
Compared structures
- 7ESY · Crystal structure of the complex formed by Wolbachia cytoplasmic incompatibility factors… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3CP62
- Every structure of UniProt B3CP63
- Elsewhere: RCSB PDB 7ESY · PDBe 7ESY · UniProt B3CP62 · UniProt B3CP63
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.