MolNFT v1 · #177730 · protein
Glycosyltransferase in complex with udp and st
7ES1: “Glycosyltransferase in complex with udp and st”. X-ray diffraction, 2 ligands (UDP, JDF), 3 pockets (best druggability 0.80). MolNFT v1 #177730 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7ES1
- Type
- protein
- Length
- 408 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosyltransferase
- EC
- 2.4.1.-
- UniProt
- Q0DPB7
- Ligands
- UDP, JDF
- Pockets
- 3 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycosyltransferase (EC 2.4.1.-) | protein | 408 | 45% helix, 15% strand | Q0DPB7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 655 | 0.80 | 0.85 | 69 | UDP, JDF |
| 2 | 70 | 0.52 | 0.86 | 22 | empty |
| 3 | 72 | 0.34 | 0.75 | 15 | empty |
Compared structures
- 7ES1 · glycosyltransferase in complex with UDP and ST · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0DPB7
- Elsewhere: RCSB PDB 7ES1 · PDBe 7ES1 · UniProt Q0DPB7
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