MolNFT v1 · #177712 · protein
Crystal structure of human biliverdin IX-beta reductase B with deferasirox (icl)
7ERC · Flavin reductase (NADPH): “Crystal structure of human biliverdin IX-beta reductase B with deferasirox (icl)”. X-ray diffraction, 3 ligands (NAP, JBL, SO4), 3 pockets (best druggability 0.81). MolNFT v1 #177712 on GenesisL1: 3D…
- PDB
- 7ERC
- Type
- protein
- Length
- 412 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flavin reductase (NADPH)
- EC
- 1.5.1.30, 1.3.1.24
- UniProt
- P30043
- Ligands
- NAP, JBL, SO4
- Pockets
- 3 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Flavin reductase (NADPH) (EC 1.5.1.30, 1.3.1.24) | protein | 206 | 36% helix, 21% strand | P30043 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · 2 copies · chains A, B
- JBL · 4-[3,5-bis(2-hydroxyphenyl)-1,2,4-triazol-1-yl]benzoic acid · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 834 | 0.81 | 0.83 | 55 | NAP |
| 2 | 488 | 0.71 | 0.81 | 49 | NAP, JBL |
| 3 | 262 | 0.61 | 0.80 | 37 | empty |
Interfaces
1 interface between chains.
- A–B · 683 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7ERC · Crystal structure of human Biliverdin IX-beta reductase B with Deferasirox (ICL) · the same entry in another collection · chain A against A, TM-score 1.00
- P30043 · AlphaFold monomer V2.0 prediction for flavin reductase (NADPH) (P30043) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P30043
- Elsewhere: RCSB PDB 7ERC · PDBe 7ERC · UniProt P30043
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.