MolNFT v1 · #177627 · RNA
Crystal structure of the pepper aptamer in complex with hbc, cesium soak
7EOJ: “Crystal structure of the pepper aptamer in complex with hbc, cesium soak”. X-ray diffraction, 3 ligands (J8F, MG, CS). MolNFT v1 #177627 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7EOJ
- Type
- RNA
- Length
- 49 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- J8F, MG, CS
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 49 | — | — |
Ligands and binding sites
- J8F · 4-[(~{Z})-1-cyano-2-[4-[2-hydroxyethyl(methyl) amino]phenyl]ethenyl]benzenecarbonitrile · ligand · chains A
- MG · Magnesium ion · metal · 9 copies · chains A
- CS · Cesium ion · metal · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7EOJ · Crystal structure of the Pepper aptamer in complex with HBC, cesium soak · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7EOJ · PDBe 7EOJ
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