MolNFT v1 · #177562 · protein
Putative leptospira interrogans recombinant L-amino acid oxidase
7EME · NAD(P)/FAD-dependent oxidoreductase: “Putative leptospira interrogans recombinant L-amino acid oxidase”. X-ray diffraction, 1 ligand (FAD), 14 pockets (best druggability 0.86). MolNFT v1 #177562 on GenesisL1: 3D structure, binding…
- PDB
- 7EME
- Type
- protein
- Length
- 825 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NAD(P)/FAD-dependent oxidoreductase
- UniProt
- A0A4D8SV19
- Ligands
- FAD
- Pockets
- 14 · best druggability 0.86
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NAD(P)/FAD-dependent oxidoreductase | protein | 413 | 35% helix, 24% strand | A0A4D8SV19 |
| B | NAD(P)/FAD-dependent oxidoreductase | protein | 412 | 35% helix, 25% strand | A0A4D8SV19 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
14 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 470 | 0.86 | 0.93 | 65 | FAD |
| 2 | 469 | 0.86 | 0.93 | 59 | FAD |
| 3 | 202 | 0.81 | 0.95 | 59 | empty |
| 4 | 259 | 0.67 | 0.83 | 39 | empty |
| 5 | 259 | 0.65 | 0.82 | 43 | empty |
Interfaces
1 interface between chains.
- A–B · 1931 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 7EME · Putative Leptospira interrogans recombinant L-amino acid oxidase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A4D8SV19
- Elsewhere: RCSB PDB 7EME · PDBe 7EME · UniProt A0A4D8SV19
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