MolNFT v1 · #177534 · protein
LC3B modificated with a covalent probe
7ELG · Microtubule-associated proteins 1A/1B light chain 3B: “LC3B modificated with a covalent probe”. X-ray diffraction, 2 ligands (8Z6, SO4), 1 pocket (best druggability 0.42). MolNFT v1 #177534 on GenesisL1: 3D structure, binding sites…
- PDB
- 7ELG
- Type
- protein
- Length
- 122 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Microtubule-associated proteins 1A/1B light chain 3B
- UniProt
- Q9GZQ8
- Ligands
- 8Z6, SO4
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Microtubule-associated proteins 1A/1B light chain 3B | protein | 122 | 30% helix, 22% strand | Q9GZQ8 |
Ligands and binding sites
- 8Z6 · 2-methylidene-5-thiophen-2-yl-cyclohexane-1,3-dione · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 131 | 0.42 | 0.75 | 25 | empty |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9GZQ8
- Elsewhere: RCSB PDB 7ELG · PDBe 7ELG · UniProt Q9GZQ8
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