MolNFT v1 · #17750 · protein
Refinement of adenovirus type 2 hexon with cns
1P2Z · Hexon protein: “Refinement of adenovirus type 2 hexon with cns”. X-ray diffraction, 10 pockets (best druggability 0.74). MolNFT v1 #17750 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1P2Z
- Type
- protein
- Length
- 887 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hexon protein
- UniProt
- P03277
- Pockets
- 10 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hexon protein | protein | 887 | 18% helix, 28% strand | P03277 |
Ligands and binding sites
- CIT · Citric acid · additive · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 674 | 0.74 | 0.80 | 72 | CIT |
| 2 | 339 | 0.65 | 0.80 | 39 | empty |
| 3 | 432 | 0.64 | 0.77 | 32 | empty |
| 4 | 277 | 0.60 | 0.79 | 31 | empty |
| 5 | 383 | 0.59 | 0.76 | 46 | empty |
Compared structures
- 1P2Z · Refinement of Adenovirus Type 2 Hexon with CNS · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03277
- Elsewhere: RCSB PDB 1P2Z · PDBe 1P2Z · UniProt P03277
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