MolNFT v1 · #177251 · protein
M4 family peptidase PLM4P-mature form
7ECC: “M4 family peptidase PLM4P-mature form”. X-ray diffraction, 3 ligands (ZN, CA, PO4), 2 pockets (best druggability 0.51). MolNFT v1 #177251 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7ECC
- Type
- protein
- Length
- 299 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- M4 family peptidase
- Ligands
- ZN, CA, PO4
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | M4 family peptidase | protein | 299 | 39% helix, 16% strand | — |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
- CA · Calcium ion · metal · chains A
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 121 | 0.51 | 0.81 | 23 | empty |
| 2 | 128 | 0.43 | 0.76 | 28 | PO4 |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7ECC · M4 family peptidase PlM4P-mature form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7ECC · PDBe 7ECC
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