MolNFT v1 · #177231 · protein
The structural analysis of A.MUCINIPHILA sulfatase
7EBQ: “The structural analysis of A.MUCINIPHILA sulfatase”. X-ray diffraction, 2 ligands (NAG, CA), 4 pockets (best druggability 0.45). MolNFT v1 #177231 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7EBQ
- Type
- protein
- Length
- 522 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sulfatase
- UniProt
- B2UR15
- Ligands
- NAG, CA
- Pockets
- 4 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sulfatase | protein | 522 | 35% helix, 16% strand | B2UR15 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 150 | 0.45 | 0.76 | 30 | NAG |
| 2 | 191 | 0.45 | 0.74 | 30 | empty |
| 3 | 101 | 0.41 | 0.77 | 14 | empty |
| 4 | 85 | 0.37 | 0.76 | 20 | empty |
Compared structures
- 7EBQ · The structural analysis of A.Muciniphila sulfatase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2UR15
- Elsewhere: RCSB PDB 7EBQ · PDBe 7EBQ · UniProt B2UR15
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