MolNFT v1 · #177156 · RNA
Crystal structure of a class I PREQ1 riboswitch aptamer (AB13-14) complexed with a cognate ligand-derived photoaffinity probe
7E9E · 33-mer RNA: “Crystal structure of a class I PREQ1 riboswitch aptamer (AB13-14) complexed with a cognate ligand-derived…”. X-ray diffraction, 3 ligands (J0C, MG, SO4). MolNFT v1 #177156 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7E9E
- Type
- RNA
- Length
- 33 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 33-mer RNA
- Ligands
- J0C, MG, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 33-mer RNA | rna | 33 | — | — |
Ligands and binding sites
- J0C · 2-azanyl-5-[[2-(3-but-3-ynyl-1,2-diazirin-3-yl) ethylamino]methyl]-1,7-dihydropyrrolo[2,3-d]pyrimidin-4-one · ligand · chains A
- MG · Magnesium ion · metal · 3 copies · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7E9E · Crystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7E9E · PDBe 7E9E
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.