GL1X · GenesisL1 explorer

Ligand · J0C

J0C · 2-azanyl-5-[[2-(3-but-3-ynyl-1,2-diazirin-3-yl) ethylamino]methyl]-1,7-dihydropyrrolo[2,3-d]pyrimidin-4-one

J0C, 2-azanyl-5-[[2-(3-but-3-ynyl-1,2-diazirin-3-yl) ethylamino]methyl]-1,7-dihydropyrrolo[2,3-d]pyrimidin-4-one (C14 H17 N7 O, 299.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site…

Component
J0C
Formula
C14 H17 N7 O
Class
ligand
Structures
4
PDB entries
2

Binding sites

J0C in 4 structures; the first of them:

  • 7E9E · Crystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a… · J0C A101 · binds G5, U6, C7, G11, U12, C15, C16, A28 and 2 more
  • 7E9I · Crystal structure of a class I PreQ1 riboswitch aptamer (wild-type) complexed with a… · J0C A101 · binds G4, G5, U6, C7, G11, A13, A14, C15 and 4 more
  • 7E9E · Crystal structure of a class I PREQ1 riboswitch aptamer (AB13-14) complexed with a… · J0C A101 · binds G5, U6, C7, G11, U12, C15, C16, A28 and 2 more
  • 7E9I · Crystal structure of a class I PREQ1 riboswitch aptamer (wild-type) complexed with a… · J0C A101 · binds G4, G5, U6, C7, G11, A13, A14, C15 and 4 more

Residues it binds most

C 4, A 4, G 4, U 4 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • MG · Magnesium ion

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