MolNFT v1 · #177145 · protein
Crystal structure of the receiver domain (D51E) of the response regulator vbrr from vibrio parahaemolyticus
7E90 · DNA-binding response regulator: “Crystal structure of the receiver domain (D51E) of the response regulator vbrr from vibrio parahaemolyticus”. X-ray diffraction, 2 pockets (best druggability 0.43). MolNFT v1 #177145 on GenesisL1: 3D…
- PDB
- 7E90
- Type
- protein
- Length
- 231 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA-binding response regulator
- UniProt
- A0A2R9VV79
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-binding response regulator | protein | 116 | 43% helix, 23% strand | A0A2R9VV79 |
| B | DNA-binding response regulator | protein | 115 | 43% helix, 23% strand | A0A2R9VV79 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.43 | 0.80 | 18 | empty |
| 2 | 53 | 0.25 | 0.73 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 800 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 7E90 · Crystal structure of the receiver domain (D51E) of the response regulator VbrR from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2R9VV79
- Elsewhere: RCSB PDB 7E90 · PDBe 7E90 · UniProt A0A2R9VV79
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