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Crystal structure of the receiver domain (D51E) of the response regulator vbrr from vibrio parahaemolyticus
Analyse Crystal structure of the receiver domain (D51E) of the response regulator vbrr… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7E90
- Type
- protein
- Length
- 231 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA-binding response regulator
- UniProt
- A0A2R9VV79
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-binding response regulator | protein | 116 | 43% helix, 23% strand | A0A2R9VV79 |
| B | DNA-binding response regulator | protein | 115 | 43% helix, 23% strand | A0A2R9VV79 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.43 | 0.80 | 18 | empty |
| 2 | 53 | 0.25 | 0.73 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 800 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 7E90 · Crystal structure of the receiver domain (D51E) of the response regulator VbrR from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2R9VV79
- Elsewhere: RCSB PDB 7E90 · PDBe 7E90 · UniProt A0A2R9VV79
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