MolNFT v1 · #176837 · protein
Crystal structures of D-allulose 3-epimerase with D-sorbose from sinorhizobium fredii
7DZ5: “Crystal structures of D-allulose 3-epimerase with D-sorbose from sinorhizobium fredii”. X-ray diffraction, 3 ligands (SDD, HVC, MG). MolNFT v1 #176837 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DZ5
- Type
- protein
- Length
- 1,130 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A249Q1V1
- Ligands
- SDD, HVC, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 283 | — | A0A249Q1V1 |
| B, D | — | protein | 282 | — | A0A249Q1V1 |
Ligands and binding sites
- SDD · D-sorbose · ligand · 4 copies · chains A, B, C, D
- HVC · alpha-D-Sorbopyranose · ligand · 3 copies · chains A, C, D
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DZ5 · Crystal structures of D-allulose 3-epimerase with D-sorbose from Sinorhizobium fredii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A249Q1V1
- Elsewhere: RCSB PDB 7DZ5 · PDBe 7DZ5 · UniProt A0A249Q1V1
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