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Ligand · SDD

SDD · D-sorbose

SDD, D-sorbose (C6 H12 O6, 180.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
SDD
Formula
C6 H12 O6
Class
ligand
Structures
2
PDB entries
1

Binding sites

SDD in 2 structures; the first of them:

  • 7DZ5 · Crystal structures of D-allulose 3-epimerase with D-sorbose from Sinorhizobium fredii · SDD A301 · binds HIS9, GLU38, PRO40, SER66, LEU67, GLY103, ILE109, GLU146 and 9 more
  • 7DZ5 · Crystal structures of D-allulose 3-epimerase with D-sorbose from sinorhizobium fredii · SDD A301 · binds HIS9, SER66, GLU146, GLU152, ASP179, HIS182, HIS205, ARG211 and 1 more

Residues it binds most

GLU 8, HIS 8, LEU 7, ARG 8, ASP 8, SER 8, VAL 5, GLY 5, ILE 5, PRO 4 (residue and the binding sites it lines).

Found with

  • HVC · alpha-D-Sorbopyranose
  • MG · Magnesium ion

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