MolNFT v1 · #176822 · protein
Crystal structure of histone lysine demethylase 4D (KDM4D) in complex with the inhibitor 5-hydroxy-2-METHYLPYRAZOLO[1,5-A]PYRIDO[3,2- E]PYRIMIDINE-3-carbonitrile
7DYQ: “Crystal structure of histone lysine demethylase 4D (KDM4D) in complex with the inhibitor…”. X-ray diffraction, 2 ligands (HR0, FE). MolNFT v1 #176822 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DYQ
- Type
- protein
- Length
- 330 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6B0I6
- Ligands
- HR0, FE
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 330 | — | Q6B0I6 |
Ligands and binding sites
- HR0 · 5-hydroxy-2-methylpyrazolo[1,5-a]pyrido[3,2-e]pyrimidine-3-carbonitrile · ligand · chains A
- FE · Fe (III) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DYQ · Crystal structure of histone lysine demethylase 4D (KDM4D) in complex with the inhibitor… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6B0I6
- Elsewhere: RCSB PDB 7DYQ · PDBe 7DYQ · UniProt Q6B0I6
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