MolNFT v1 · #176809 · protein
Thermotoga maritima ferritin mutant-flal
7DY8: “Thermotoga maritima ferritin mutant-flal”. X-ray diffraction, 2 ligands (CA, FE), 2 pockets (best druggability 0.70). MolNFT v1 #176809 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DY8
- Type
- protein
- Length
- 325 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferritin
- EC
- 1.16.3.2
- UniProt
- Q9X0L2
- Ligands
- CA, FE
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 79% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | Ferritin (EC 1.16.3.2) | protein | 163 | 79% helix, 1% strand | Q9X0L2 |
| A | Ferritin (EC 1.16.3.2) | protein | 162 | 78% helix, 1% strand | Q9X0L2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 228 | 0.70 | 0.86 | 26 | empty |
| 2 | 63 | 0.31 | 0.75 | 17 | CA |
Interfaces
1 interface between chains.
- H–A · 1281 Ų buried · 29 hydrogen bonds · protein-protein
Compared structures
- 7DY8 · Thermotoga maritima ferritin mutant-FLAL · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X0L2
- Elsewhere: RCSB PDB 7DY8 · PDBe 7DY8 · UniProt Q9X0L2
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