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MolNFT v1 · #176752 · protein + RNA

Complex structure of SAM-dependent methyltransferase ribozyme

7DWH: “Complex structure of SAM-dependent methyltransferase ribozyme”. X-ray diffraction, 2 ligands (SAM, CU). MolNFT v1 #176752 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7DWH
Type
protein + RNA
Length
465 residues
Chains
6
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P09012
Ligands
SAM, CU

Structure

x-ray diffraction · 6 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein95—P09012
B—protein85—P09012
C—protein97—P09012
D—protein97—P09012
X—rna45——
Y—rna46——

Ligands and binding sites

  • SAM · S-adenosylmethionine · ligand · chains X
  • CU · Copper (II) ion · metal · 2 copies · chains X, Y

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7DWH · Complex structure of SAM-dependent methyltransferase ribozyme · the same entry in another collection · chain A against A, TM-score 1.00

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