MolNFT v1 · #176710 · protein
A complex of a new GH20 enzyme from bacteroides thetaiotaomicron
7DVB: “A complex of a new GH20 enzyme from bacteroides thetaiotaomicron”. X-ray diffraction, 2 ligands (Q4Z, NGS). MolNFT v1 #176710 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DVB
- Type
- protein
- Length
- 2,052 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0P0FIE8
- Ligands
- Q4Z, NGS
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 507 | — | A0A0P0FIE8 |
| B | — | protein | 508 | — | A0A0P0FIE8 |
| C | — | protein | 519 | — | A0A0P0FIE8 |
| D | — | protein | 518 | — | A0A0P0FIE8 |
Ligands and binding sites
- Q4Z · [(3~{a}~{R},5~{R},6~{S},7~{R},7~{a}~{R})-2-methyl-6,7-bis(oxidanyl)-5,6,7,7~{a}-tetrahydro-3~{a}~{H}-pyrano[3,2-d][1,3]oxazol-1-ium-5-yl]methyl sulfate · ligand · 4 copies · chains A, B, C, D
- NGS · 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose · ligand · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DVB · D335N variant of Bt4394 in complex with 6SO3-NAG-oxazoline intermediate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0P0FIE8
- Elsewhere: RCSB PDB 7DVB · PDBe 7DVB · UniProt A0A0P0FIE8
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