MolNFT v1 · #176454 · protein
Crystal structure of salmonella effector in complex with NAD and host co-factor ARF1
7DN9: “Crystal structure of salmonella effector in complex with NAD and host co-factor ARF1”. X-ray diffraction, 3 ligands (NAD, GDP, MG). MolNFT v1 #176454 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DN9
- Type
- protein
- Length
- 1,840 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8ZPY9, P84077
- Ligands
- NAD, GDP, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, G | — | protein | 299 | — | Q8ZPY9 |
| B, D, F, H | — | protein | 161 | — | P84077 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 4 copies · chains A, E, C, G
- GDP · Guanosine-5'-diphosphate · ligand · 4 copies · chains B, D, F, H
- MG · Magnesium ion · metal · 4 copies · chains B, D, F, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DN9 · Crystal structure of Salmonella effector in complex with NAD and host co-factor ARF1 · the same entry in another collection · chain H against H, TM-score 1.00
- P84077 · AlphaFold monomer V2.0 prediction for ADP-ribosylation factor 1 (P84077) · a predicted model of the same protein · chain D against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZPY9
- Every structure of UniProt P84077
- Elsewhere: RCSB PDB 7DN9 · PDBe 7DN9 · UniProt Q8ZPY9 · UniProt P84077
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