MolNFT v1 · #176306 · protein
Electron crystallographic structure of catalase using a direct electron detector at 300 kv
7DI8: “Electron crystallographic structure of catalase using a direct electron detector at 300 kv”. Electron crystallography, 2 ligands (HEM, NDP). MolNFT v1 #176306 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DI8
- Type
- protein
- Length
- 1,996 residues
- Chains
- 4
- Method
- electron crystallography
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00432
- Ligands
- HEM, NDP
Structure
electron crystallography · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 499 | — | P00432 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains A, D, B, C
- NDP · Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate · ligand · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DI8 · Electron crystallographic structure of Catalase using a direct electron detector at 300 kV · the same entry in another collection · chain D against D, TM-score 1.00
- P00432 · AlphaFold monomer V2.0 prediction for catalase (P00432) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00432
- Elsewhere: RCSB PDB 7DI8 · PDBe 7DI8 · UniProt P00432
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