MolNFT v1 · #176251 · protein
The structure of the arabidopsis thaliana guanosine deaminase in reaction with 2'-O-methylguanosine
7DGC: “The structure of the arabidopsis thaliana guanosine deaminase in reaction with 2'-O-methylguanosine”. X-ray diffraction, 3 ligands (H5C, ZN, NA). MolNFT v1 #176251 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DGC
- Type
- protein
- Length
- 314 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q94BU8
- Ligands
- H5C, ZN, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 157 | — | Q94BU8 |
Ligands and binding sites
- H5C · 9-[(2R,3R,4R)-5-(hydroxymethyl)-3-methoxy-4-oxidanyl-oxolan-2-yl]-3H-purine-2,6-dione · ligand · 2 copies · chains A, D
- ZN · Zinc ion · metal · 2 copies · chains A, D
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DGC · The structure of the Arabidopsis thaliana guanosine deaminase in reaction with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q94BU8 · AlphaFold monomer V2.0 prediction for guanosine deaminase (Q94BU8) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q94BU8
- Elsewhere: RCSB PDB 7DGC · PDBe 7DGC · UniProt Q94BU8
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