MolNFT v1 · #176212 · protein
Crystal structure of a C2 domain protein from ramazzottius varieornatus
7DF2: “Crystal structure of a C2 domain protein from ramazzottius varieornatus”. X-ray diffraction, 3 ligands (GLC, BGC, CA). MolNFT v1 #176212 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DF2
- Type
- protein
- Length
- 170 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- C2 domain protein
- UniProt
- A0A1D1UCW7
- Ligands
- GLC, BGC, CA
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | C2 domain protein | protein | 170 | 4% helix, 52% strand | A0A1D1UCW7 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · chains A
- BGC · beta-D-glucopyranose · sugar
- CA · Calcium ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 7DF2 · Crystal structure of a C2 domain protein from Ramazzottius varieornatus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1D1UCW7
- Elsewhere: RCSB PDB 7DF2 · PDBe 7DF2 · UniProt A0A1D1UCW7
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