MolNFT v1 · #176202 · protein
Crystal structure of SARS-cov-2 rbd in complex with a neutralizing antibody scfv
7DEO: “Crystal structure of SARS-cov-2 rbd in complex with a neutralizing antibody scfv”. X-ray diffraction, 2 ligands (NAG, CA). MolNFT v1 #176202 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DEO
- Type
- protein
- Length
- 871 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, CA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 241 | — | — |
| B | — | protein | 202 | — | P0DTC2 |
| C | — | protein | 234 | — | — |
| D | — | protein | 194 | — | P0DTC2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains B, D
- CA · Calcium ion · metal · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DEO · Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody scFv · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7DEO · PDBe 7DEO · UniProt P0DTC2
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