MolNFT v1 · #176098 · protein
The structure of the arabidopsis thaliana guanosine deaminase
7DBF: “The structure of the arabidopsis thaliana guanosine deaminase”. X-ray diffraction, 1 ligand (ZN), 3 pockets (best druggability 0.67). MolNFT v1 #176098 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DBF
- Type
- protein
- Length
- 310 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Guanosine deaminase
- EC
- 3.5.4.15
- UniProt
- Q94BU8
- Ligands
- ZN
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Guanosine deaminase (EC 3.5.4.15) | protein | 153 | 44% helix, 20% strand | Q94BU8 |
| D | Guanosine deaminase (EC 3.5.4.15) | protein | 157 | 45% helix, 19% strand | Q94BU8 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 219 | 0.67 | 0.85 | 27 | ZN |
| 2 | 239 | 0.67 | 0.83 | 32 | empty |
| 3 | 63 | 0.28 | 0.73 | 11 | empty |
Interfaces
1 interface between chains.
- A–D · 1511 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q94BU8
- Elsewhere: RCSB PDB 7DBF · PDBe 7DBF · UniProt Q94BU8
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