MolNFT v1 · #176031 · protein
Spdh spermidine dehydrogenase native structure
7D9G: “Spdh spermidine dehydrogenase native structure”. X-ray diffraction, 2 ligands (FAD, HEM). MolNFT v1 #176031 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7D9G
- Type
- protein
- Length
- 1,172 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9HXS8
- Ligands
- FAD, HEM
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 584 | — | Q9HXS8 |
| B | — | protein | 588 | — | Q9HXS8 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7D9G · SpdH Spermidine dehydrogenase native structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HXS8
- Elsewhere: RCSB PDB 7D9G · PDBe 7D9G · UniProt Q9HXS8
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