MolNFT v1 · #175974 · protein

Crystal structure of the phosphodiesterase domain of salpingoeca rosetta rhodopsin phosphodiesterase

7D7P: “Crystal structure of the phosphodiesterase domain of salpingoeca rosetta rhodopsin phosphodiesterase”. X-ray diffraction, 2 ligands (ZN, MG), 1 pocket (best druggability 0.70). MolNFT v1 #175974 on GenesisL1: 3D structure, binding…

PDB: 7D7P
Type: protein
Length: 329 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphodiesterase
EC: 3.1.4.-
UniProt: F2TZN0
Ligands: ZN, MG
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 71% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphodiesterase (EC 3.1.4.-)	protein	329	71% helix, 0% strand	F2TZN0

Ligands and binding sites

ZN · Zinc ion · metal · chains A
MG · Magnesium ion · metal · chains A
EDO · 1,2-ethanediol · additive · 3 copies · chains A
2PE · Nonaethylene glycol · additive · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	434	0.70	0.81	44	MG

Compared structures

7D7P · Crystal structure of the phosphodiesterase domain of Salpingoeca rosetta rhodopsin… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt F2TZN0
Elsewhere: RCSB PDB 7D7P · PDBe 7D7P · UniProt F2TZN0

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