MolNFT v1 · #175964 · protein
The structure of dcsb complex with its substrate analogue
7D79: “The structure of dcsb complex with its substrate analogue”. X-ray diffraction, 4 ligands (GY0, GYF, NA). MolNFT v1 #175964 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7D79
- Type
- protein
- Length
- 1,168 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- J4WAT9
- Ligands
- GY0, GYF, NA, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | — | protein | 295 | — | J4WAT9 |
| A | — | protein | 293 | — | J4WAT9 |
| B | — | protein | 290 | — | J4WAT9 |
| C | — | protein | 290 | — | J4WAT9 |
Ligands and binding sites
- GY0 · methyl 3-[(E,3R,9R)-3,9-bis(oxidanyl)dec-4-enoyl]sulfanylpropanoate · ligand · chains D
- GYF · methyl 3-sulfanylpropanoate · ligand · chains B
- NA · Sodium ion · metal · chains C
- CL · Chloride ion · ion · 4 copies · chains D, A, C
- EDO · 1,2-ethanediol · additive · 6 copies · chains D, B, A
- GOL · Glycerol · additive · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7D79 · The structure of DcsB complex with its substrate analogue · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt J4WAT9
- Elsewhere: RCSB PDB 7D79 · PDBe 7D79 · UniProt J4WAT9
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