MolNFT v1 · #175907 · DNA

Left-handed G-quadruplex containing one bulge

7D5D · 1XBULGE-LHG4MOTIF: “Left-handed G-quadruplex containing one bulge”. X-ray diffraction, 2 ligands (SPM, K). MolNFT v1 #175907 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7D5D
Type: DNA
Length: 27 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 1XBULGE-LHG4MOTIF
Ligands: SPM, K

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	1XBULGE-LHG4MOTIF	dna	27	—	—

Ligands and binding sites

SPM · Spermine · ligand · 2 copies · chains A
K · Potassium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7D5D · Left-handed G-quadruplex containing one bulge · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7D5D · PDBe 7D5D

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