MolNFT v1 · #175900 · protein
Structure of the peptidylarginine deiminase type III (PAD3) in complex with cl-amidine
7D56: “Structure of the peptidylarginine deiminase type III (PAD3) in complex with cl-amidine”. X-ray diffraction, 3 ligands (BFB, CA, CL). MolNFT v1 #175900 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7D56
- Type
- protein
- Length
- 1,912 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9ULW8
- Ligands
- BFB, CA, CL
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | — | protein | 640 | — | Q9ULW8 |
| B | — | protein | 635 | — | Q9ULW8 |
| A | — | protein | 637 | — | Q9ULW8 |
Ligands and binding sites
- BFB · N-[(1S)-1-(aminocarbonyl)-4-(ethanimidoylamino) butyl]benzamide · ligand · 3 copies · chains C, B, A
- CA · Calcium ion · metal · 15 copies · chains C, B, A
- CL · Chloride ion · ion · 12 copies · chains C, B, A
- EDO · 1,2-ethanediol · additive · 3 copies · chains C, A
- GOL · Glycerol · additive · chains C, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7D56 · Structure of the peptidylarginine deiminase type III (PAD3) in complex with Cl-amidine · the same entry in another collection · chain C against C, TM-score 1.00
- Q9ULW8 · AlphaFold monomer V2.0 prediction for protein-arginine deiminase type-3 (Q9ULW8) · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ULW8
- Elsewhere: RCSB PDB 7D56 · PDBe 7D56 · UniProt Q9ULW8
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