MolNFT v1 · #175880 · protein

Ddatp complex of cyclic trinucleotide synthase cdnd

7D4J: “Ddatp complex of cyclic trinucleotide synthase cdnd”. X-ray diffraction, 2 ligands (DDS, MG). MolNFT v1 #175880 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7D4J
Type: protein
Length: 344 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0DSP4
Ligands: DDS, MG

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	344	—	P0DSP4

Ligands and binding sites

DDS · 2',3'-dideoxyadenosine triphosphate · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7D4J · ddATP complex of cyclic trinucleotide synthase CdnD · the same entry in another collection · chain A against A, TM-score 1.00
P0DSP4 · AlphaFold monomer V2.0 prediction for cyclic AMP-AMP-gmp synthase (P0DSP4) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0DSP4
Elsewhere: RCSB PDB 7D4J · PDBe 7D4J · UniProt P0DSP4

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