MolNFT v1 · #175833 · protein

Structure of sybody MR17-SR31 fusion in complex with the SARS-cov-2 S receptor binding domain (rbd)

7D30: “Structure of sybody MR17-SR31 fusion in complex with the SARS-cov-2 S receptor binding domain (rbd)”. X-ray diffraction, 5 ligands (NAG, FUC, BMA). MolNFT v1 #175833 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7D30
Type: protein
Length: 435 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0DTC2
Ligands: NAG, FUC, BMA, MAN, CD

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	234	—	—
B	—	protein	201	—	P0DTC2

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains B
FUC · alpha-L-fucopyranose · sugar · 2 copies · chains B
BMA · beta-D-mannopyranose · sugar
MAN · alpha-D-mannopyranose · sugar
CD · Cadmium ion · metal · 17 copies · chains A, B
ACT · Acetate ion · additive · 14 copies · chains A, B
GOL · Glycerol · additive · 5 copies · chains A, B
BU2 · 1,3-butanediol · additive · 5 copies · chains A, B
1PE · Pentaethylene glycol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7D30 · Structure of sybody MR17-SR31 fusion in complex with the SARS-CoV-2 S Receptor Binding… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

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Every structure of UniProt P0DTC2
Elsewhere: RCSB PDB 7D30 · PDBe 7D30 · UniProt P0DTC2

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