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MolNFT v1 · #175828 · protein

Crystal structure of BACE1 in complex with N-{3-[(5R)-3-amino-2,5- dimethyl-1,1-dioxo-5,6-dihydro-2H-1LAMBDA6,2,4-thiadiazin-5-yl]-4- fluorophenyl}-5-fluoropyridine-2-carboxamide

7D2V: “Crystal structure of BACE1 in complex with N-{3-[(5R)-3-amino-2,5…”. X-ray diffraction, 2 ligands (66F, IOD). MolNFT v1 #175828 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7D2V
Type
protein
Length
379 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P56817
Ligands
66F, IOD

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein379—P56817

Ligands and binding sites

  • 66F · N-{3-[(5R)-3-amino-2,5-dimethyl-1,1-dioxido-5,6-dihydro-2H-1,2,4-thiadiazin-5-yl]-4-fluorophenyl}-5-fluoropyridine-2-carboxamide · ligand · chains A
  • IOD · Iodide ion · ion · 3 copies · chains A
  • GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7D2V · Crystal Structure of BACE1 in complex with N-{3-[(5R)-3-amino-2,5-dimethyl-1,1-dioxo-5,6-d… · the same entry in another collection · chain A against A, TM-score 1.00
  • P56817 · AlphaFold monomer V2.0 prediction for beta-secretase 1 (P56817) · a predicted model of the same protein · chain A against A, TM-score 0.98

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