MolNFT v1 · #175733 · protein
S protein of SARS-cov-2 in complex bound with P5A-2F11_3B
7CZZ: “S protein of SARS-cov-2 in complex bound with P5A-2F11_3B”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #175733 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7CZZ
- Type
- protein
- Length
- 4,349 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2, P0DP01, V9HW68, A0A5C2G1U0, P01834
- Ligands
- NAG
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1006 | — | P0DTC2 |
| B | — | protein | 1007 | — | P0DTC2 |
| C | — | protein | 1004 | — | P0DTC2 |
| H, I, J | — | protein | 224 | — | P0DP01, V9HW68 |
| K, M, N | — | protein | 220 | — | A0A5C2G1U0, P01834 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 80 copies · chains A, B, C, H, I, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7CZZ · S protein of SARS-CoV-2 in complex bound with P5A-2F11_3B · the same entry in another collection · chain N against N, TM-score 1.00
- P01834 · AlphaFold monomer V2.0 prediction for immunoglobulin kappa constant (P01834) · a predicted model of the same protein · chain K against A, TM-score 0.48
- P0DP01 · AlphaFold monomer V2.0 prediction for immunoglobulin heavy variable 1-8 (P0DP01) · a predicted model of the same protein · chain H against A, TM-score 0.42
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Every structure of UniProt P0DP01
- Every structure of UniProt V9HW68
- Every structure of UniProt A0A5C2G1U0
- Every structure of UniProt P01834
- Elsewhere: RCSB PDB 7CZZ · PDBe 7CZZ · UniProt P0DTC2 · UniProt P0DP01 · UniProt V9HW68 · UniProt A0A5C2G1U0 · UniProt P01834
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