MolNFT v1 · #175717 · protein
PL24 ulvan lyase-ULY1
7CZH: “PL24 ulvan lyase-ULY1”. X-ray diffraction, 1 ligand (CA), 8 pockets (best druggability 0.81). MolNFT v1 #175717 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7CZH
- Type
- protein
- Length
- 962 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ULY1
- UniProt
- A0A0J8GWN9
- Ligands
- CA
- Pockets
- 8 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | ULY1 | protein | 481 | 7% helix, 44% strand | A0A0J8GWN9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 958 | 0.81 | 0.82 | 99 | GOL |
| 2 | 1051 | 0.79 | 0.80 | 96 | empty |
| 3 | 304 | 0.57 | 0.77 | 35 | CA |
| 4 | 88 | 0.49 | 0.83 | 17 | GOL |
| 5 | 99 | 0.39 | 0.76 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 566 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7CZH · PL24 ulvan lyase-Uly1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0J8GWN9
- Elsewhere: RCSB PDB 7CZH · PDBe 7CZH · UniProt A0A0J8GWN9
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