MolNFT v1 · #175691 · protein

Crystal structure of li-cadherin EC1-4

7CYM: “Crystal structure of li-cadherin EC1-4”. X-ray diffraction, 4 ligands (NAG, BMA, MAN). MolNFT v1 #175691 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7CYM
Type: protein
Length: 835 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q12864
Ligands: NAG, BMA, MAN, CA

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	417	—	Q12864
B	—	protein	418	—	Q12864

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 9 copies · chains A, B
BMA · beta-D-mannopyranose · sugar · 2 copies · chains A, B
MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A, B
CA · Calcium ion · metal · 12 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7CYM · Crystal structure of LI-Cadherin EC1-4 · the same entry in another collection · chain A against A, TM-score 1.00
Q12864 · AlphaFold monomer V2.0 prediction for cadherin-17 (Q12864) · a predicted model of the same protein · chain A against A, TM-score 0.60

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q12864
Elsewhere: RCSB PDB 7CYM · PDBe 7CYM · UniProt Q12864

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