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MolNFT v1 · #175472 · protein + DNA

Native NSD3 bound to 187-bp nucleosome

7CRR: “Native NSD3 bound to 187-bp nucleosome”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #175472 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7CRR
Type
protein + DNA
Length
1,339 residues
Chains
11
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q92133, P62799, Q6AZJ8, Q6AZK7, Q9BZ95
Ligands
ZN

Structure

electron microscopy · 11 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
M—protein103—Q92133
B—protein82—P62799
C—protein109—Q6AZJ8
D—protein95—Q6AZK7
E—protein98—Q92133
F—protein86—P62799
G—protein110—Q6AZJ8
H—protein97—Q6AZK7
A—dna168——
K—dna168——
I—protein223—Q9BZ95

Ligands and binding sites

  • ZN · Zinc ion · metal · 3 copies · chains I

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7CRR · Native NSD3 bound to 187-bp nucleosome · the same entry in another collection · chain K against K, TM-score 1.00
  • P62799 · AlphaFold monomer V2.0 prediction for histone H4 (P62799) · a predicted model of the same protein · chain B against A, TM-score 0.97

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