MolNFT v1 · #175359 · protein + DNA
Ternary complex of DNA polymerase mu with 2-nt gapped DNA (T:DGMPNPP)
7CO8: “Ternary complex of DNA polymerase mu with 2-nt gapped DNA (T:DGMPNPP)”. X-ray diffraction, 3 ligands (XG4, MG, K). MolNFT v1 #175359 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7CO8
- Type
- protein + DNA
- Length
- 349 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NP87
- Ligands
- XG4, MG, K
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 331 | — | Q9NP87 |
| T | — | dna | 10 | — | — |
| P | — | dna | 4 | — | — |
| D | — | dna | 4 | — | — |
Ligands and binding sites
- XG4 · 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine · ligand · chains A, T, P
- MG · Magnesium ion · metal · 3 copies · chains A, P, D
- K · Potassium ion · metal · chains A, P
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7CO8 · Ternary complex of DNA polymerase Mu with 2-nt gapped DNA (T:dGMPNPP) · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NP87 · AlphaFold monomer V2.0 prediction for DNA-directed DNA/RNA polymerase mu (Q9NP87) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NP87
- Elsewhere: RCSB PDB 7CO8 · PDBe 7CO8 · UniProt Q9NP87
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