MolNFT v1 · #175300 · protein
Crystal structure of the SARS-cov-2 plpro with GRL0617
7CMD: “Crystal structure of the SARS-cov-2 plpro with GRL0617”. X-ray diffraction, 2 ligands (TTT, ZN). MolNFT v1 #175300 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7CMD
- Type
- protein
- Length
- 1,229 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTD1
- Ligands
- TTT, ZN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 306 | — | P0DTD1 |
| B | — | protein | 308 | — | P0DTD1 |
| C | — | protein | 308 | — | P0DTD1 |
| D | — | protein | 307 | — | P0DTD1 |
Ligands and binding sites
- TTT · 5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]benzamide · ligand · 4 copies · chains A, B, C, D
- ZN · Zinc ion · metal · 9 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7CMD · Crystal structure of the SARS-CoV-2 PLpro with GRL0617 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7CMD · PDBe 7CMD · UniProt P0DTD1
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