MolNFT v1 · #174967 · protein
Versatile cis-prenyltransferase MM_0014 from methanosarcina mazei (crystal type: co-fg)
7CC3: “Versatile cis-prenyltransferase MM_0014 from methanosarcina mazei (crystal type: co-fg)”. X-ray diffraction, 5 ligands (FQ0, FQF, FV3). MolNFT v1 #174967 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7CC3
- Type
- protein
- Length
- 1,700 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- FQ0, FQF, FV3, DPO, PO4
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 211 | — | — |
| B | — | protein | 221 | — | — |
| C | — | protein | 216 | — | — |
| D | — | protein | 206 | — | — |
| E | — | protein | 215 | — | — |
| F | — | protein | 204 | — | — |
| G | — | protein | 207 | — | — |
| H | — | protein | 220 | — | — |
Ligands and binding sites
- FQ0 · 2-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trienoxy]propane-1,3-diol · ligand · 8 copies · chains A, B, C, D, E, F, G, H
- FQF · (2R)-3-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trienoxy]propane-1,2-diol · ligand · 8 copies · chains A, B, C, D, E, F, G, H
- FV3 · (2S)-3-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trienoxy]propane-1,2-diol · ligand · 8 copies · chains A, B, C, D, E, F, G, H
- DPO · Diphosphate · ligand · 3 copies · chains B, E, G
- PO4 · Phosphate ion · ion · 5 copies · chains A, C, D, F, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7CC3 · Versatile cis-prenyltransferase MM_0014 from Methanosarcina mazei (crystal type: co-FG) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7CC3 · PDBe 7CC3
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