MolNFT v1 · #174853 · protein
Ambient temperature structure of bifidobacterium longum phosphoketolase with thiamine diphosphate
7C8H: “Ambient temperature structure of bifidobacterium longum phosphoketolase with thiamine diphosphate”. X-ray diffraction, 3 ligands (TPP, LMR, CA). MolNFT v1 #174853 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7C8H
- Type
- protein
- Length
- 6,457 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6R2Q7
- Ligands
- TPP, LMR, CA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, F, H | — | protein | 807 | — | Q6R2Q7 |
| D, E | — | protein | 808 | — | Q6R2Q7 |
| G | — | protein | 806 | — | Q6R2Q7 |
Ligands and binding sites
- TPP · Thiamine diphosphate · ligand · 8 copies · chains A, B, C, D, E, F, G, H
- LMR · (2S)-2-hydroxybutanedioic acid · ligand · 2 copies · chains A, B
- CA · Calcium ion · metal · 8 copies · chains A, B, C, D, E, F, G, H
- MLA · Malonic acid · additive · 3 copies · chains C, D, E, F
- SIN · Succinic acid · additive · 3 copies · chains E, F, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7C8H · Ambient temperature structure of Bifidobacterium longum phosphoketolase with thiamine… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6R2Q7
- Elsewhere: RCSB PDB 7C8H · PDBe 7C8H · UniProt Q6R2Q7
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