MolNFT v1 · #174829 · protein

Biofilm associated protein - B domain

7C7R · Biofilm-associated surface protein: “Biofilm associated protein - B domain”. X-ray diffraction, 1 ligand (CA), 12 pockets (best druggability 0.70). MolNFT v1 #174829 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7C7R
Type: protein
Length: 830 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Biofilm-associated surface protein
UniProt: Q79LN3
Ligands: CA
Pockets: 12 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, A	Biofilm-associated surface protein	protein	415	15% helix, 37% strand	Q79LN3

Ligands and binding sites

CA · Calcium ion · metal · 10 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

12 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	489	0.70	0.80	67	CA
2	343	0.69	0.83	45	empty
3	393	0.69	0.81	48	empty
4	127	0.67	0.89	21	empty
5	123	0.65	0.88	21	empty

Interfaces

1 interface between chains.

B–A · 599 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

7C7R · Biofilm associated protein - B domain · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q79LN3
Elsewhere: RCSB PDB 7C7R · PDBe 7C7R · UniProt Q79LN3

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