MolNFT v1 · #174807 · protein
Crystal structure of yak lactoperoxidase with partially coordinated na ion in the distal heme cavity
7C75: “Crystal structure of yak lactoperoxidase with partially coordinated na ion in the distal heme cavity”. X-ray diffraction, 6 ligands (HEM, NAG, CA). MolNFT v1 #174807 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7C75
- Type
- protein
- Length
- 595 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- L8ICE9
- Ligands
- HEM, NAG, CA, K, ZN, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 595 | — | L8ICE9 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
- CA · Calcium ion · metal · chains A
- K · Potassium ion · metal · chains A
- ZN · Zinc ion · metal · chains A
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7C75 · Crystal structure of yak lactoperoxidase with partially coordinated Na ion in the distal… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt L8ICE9
- Elsewhere: RCSB PDB 7C75 · PDBe 7C75 · UniProt L8ICE9
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